Boutique hotel vacation rentals in San Juan Islands

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in San Juan Islands

Guests agree: these boutique hotel rentals are highly rated for location, cleanliness, and more.

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Guest favourite

Hotel room in Cobble Hill

5 out of 5 average rating, 105 reviews

Welcome to Lavender View

Serenity and quality abound. We want your stay at Lavender View to be exceptional. We offer luxurious accommodation and top quality service in a resort-like setting on 2.5 acres. We use the Airbnb platform exclusively to handle all of our reservations. However, we encourage you to visit our own website (Lavenderview dot ca). Our website provides more information & detail on who we are and what we offer. The “Book Now” button will take you back to this Airbnb listing to make your reservation.

Guest favourite

Hotel room in Coupeville

4.98 out of 5 average rating, 99 reviews

Anchorage Inn - room #4 - The Onward

The Onward (rm 4) is in our turret, has a water view, queen bed for 2, full private bath, smart TV streaming, & fiber WiFi. Refrigerator, microwave & Keurig coffee maker are available. You can enjoy a hot breakfast served in the dining room on the first floor for NO FEE. Our award winning Inn has 6 rooms, all with different prices because they all offer a different combination of space, K or Q bed, and views. These rooms range in price depending on that combination and the time of year.

Guest favourite

Hotel room in Friday Harbor

4.99 out of 5 average rating, 95 reviews

Private guesthouse immersed in nature

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Private deck & floor-to-ceiling windows with a cozy & intimate woodsy view. Wheelchair accessible. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

Superhost

Hotel room in Sequim

4.78 out of 5 average rating, 9 reviews

Hideaway Fireplace Room with King Bed and Hot Tub

A room in our boutique hotel on the side of a 7-acre waterfront property, with private beach access! Look out at the Olympic Mountains as you enjoy the wood burning fireplace , or sit in your spa robe on your own patio looking out to the water. This studio has a kitchenette (fridge, microwave, coffee maker). King bed and euro lounger, walk-in shower. Our property also has a shared gazebo, a mini-shopping mart (for guests only), and an electric vehicle charging station if you need.

Superhost

Hotel room in Seattle

4.73 out of 5 average rating, 324 reviews

College Inn (European-Style Queen - Shared Bath)

Our family-owned College Inn is an authentic European-style* hotel in the heart of Seattle's vibrant University District & on the campus of the University of Washington, surrounded by restaurants, shops, cafes, and pubs. Newly remodeled in 2019, our guests enjoy modern comforts while in a hotel that is on the National Register of Historic Places. *In the tradition of "European-style" hotels, we have a common lounge, shared kitchen & SHARED BATHROOMS for our European-style rooms.

Superhost

Hotel room in Port Townsend

5 out of 5 average rating, 3 reviews

Bay View Room in the Heart of Port Townsend!

Wake up to views of Port Townsend Bay in our seaport boutique hotel! This second-floor room offers maritime-themed decor, one queen bed, and a full private bath. French doors open up to the balcony with two deck chairs. New eco-friendly initiatives yearly. Located in the heart of Port Townsend's cultural and historic district, the Swan is adjacent to Point Hudson Marina and just steps away from educational programs at the Northwest Maritime Center.

Superhost

Hotel room in Victoria

4.63 out of 5 average rating, 81 reviews

Superior queen room #8

The Craigmyle is a heritage building. Elegant, inviting, and completely unique – The Craigmyle redefines boutique hotel living in the heart of Victoria, BC. Tucked away in one of the city’s gorgeous residential neighborhoods, just two minutes from the historic Craigdarroch Castle, our hotel places the city’s top attractions at your doorstep, while maintaining a sense of calm and tranquility that sure to relax and inspire you.

Superhost

Hotel room in Port Angeles

4.88 out of 5 average rating, 105 reviews

#6 ✤Perfect Family Retreat- Olympic National Park✤

Our recently remodeled 2 bedroom suite is perfect for a getaway for two couples, or friends! Located in the heart Olympic National Park, each room features a comfy, queen-sized bed. The kitchenette includes a sink, mini-fridge, and microwave and makes for an ideal refreshment area. The full-sized and private bathroom can easily accommodate all guests. (Please note that there is no door between the two rooms.)

Guest favourite

Hotel room in Port Townsend

4.96 out of 5 average rating, 157 reviews

Downtown Studio Art Suite ~ NO Fees & Snack Bar!

Discover the epitome of comfort and style at our Deluxe Queen Suite, perfect for couples or solo travelers seeking a memorable stay. Nestled in the vibrant heart of downtown PT, you'll find yourself just steps away from the excitement – 16 steps, to be exact! Your Superhosts, true local experts, eagerly await your preferences to tailor your stay to perfection. No Cleaning Fee! Overnight Parking! Snack Bar!

Guest favourite

Hotel room in Friday Harbor

4.97 out of 5 average rating, 65 reviews

Green Tea room at Juniper Lane

Juniper Lane Guest House, a hip and unique boutique Inn on San Juan Island. This unique Friday Harbor accommodations is a custom crafted bold mosaic of exotic woods, tile, art, and color. Nestled on the edge of Friday Harbor overlooking Beaverton Valley it has a rural feel yet is still close to town. This Boutique Inn offers a variety of accommodations that are “brilliant and affordable” for everyone.

Guest favourite

Hotel room in Sequim

4.83 out of 5 average rating, 204 reviews

3-NW Rustic Cabin on the water-Beach-full kitchen

Step into the Great Pacific Northwest. Relax in the laid-back rustic look of the PNW, while gazing out onto the Strait of Juan de Fuca. This is a studio cabin with everything you will need to just get away and relax. Sleep in the Queen Log Bed while gazing at the water (or the 65" TV). This cottage has a full kitchen and allows dogs (no cats) for a fee of $25-$45 per pet per night.

Superhost

Hotel room in Seattle

4.8 out of 5 average rating, 79 reviews

Watertown Hotel, Studio Two Queen

Located in Seattle’s University District, Watertown Hotel puts you in a prime location in Seattle. Our hotel is where urban meets upscale, blending the two concepts into our style hotel offering. Guests will have excellent comfort and signature amenities for modern living from our Staypineapple Hotel brand. An amenity fee with Tax ($28.87 per day) will be charged upon arrival.